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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16078220_16079082_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16078220 - 16079082
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTATTTCAACC
Flanking Amino Acid:
DDDWRDSNGRIHVTISKSAQ
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.7
0.44
1
63.7
41.8
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
57.3
0.21
1.6
66.56
39.4

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044994
16060145 - 16099405
39261
ENSAPLT00000044295
16052537 - 16099405
46869
ENSAPLT00000014818
16066435 - 16099405
32971