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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16079234_16080198_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16079234 - 16080198
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTCTACTTACAA
Flanking Amino Acid:
SSDPGFTSEEGFGLVHINGT
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
82.9
0.74
0.8
77.1
31.6
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
54.5
0.14
1.9
69.52
42.5

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014818
16066435 - 16099405
32971
ENSAPLT00000044994
16060145 - 16099405
39261
ENSAPLT00000044295
16052537 - 16099405
46869