About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16080364_16082124_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16080364 - 16082124
Intron Length:
1761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAC
U12 Branch Point Sequence:
TGTGTCTGACCC
Flanking Amino Acid:
QDSGFLRHSSANSLPAIALG
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
57.3
0.18
1.4
69.3
37.7
Major PPT
79.3
0.66
0.7
72.4
25.9
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
49.2
-0
1.8
63.34
42.2

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044994
16060145 - 16099405
39261
ENSAPLT00000044295
16052537 - 16099405
46869
ENSAPLT00000014818
16066435 - 16099405
32971