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Intron Name: Anas_platyrhynchos_platyrhynchos_3_16086046_16087227_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16086046 - 16087227

Intron Length:

1182

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTATGTGGT

5'SS Class:

major

3'SS Sequence:

CTCTTGTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCAAAT

U12 Branch Point Sequence:

TCTGCCAAATGT

Flanking Amino Acid:

AMTAILASGVNHRNVLVRKS

Intron Amino Acid Position:

629

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

71.6

38.4

Major BPS

48.8

-0

1.2

55.2

38.9

Major PPT

0.77

0.8

75.9

Minor 5ss

42.2

-0.9

3.2

57.5

41.6

Minor BPS

39.8

-0.6

2.3

59.93

49.3

Associated Gene:

Gene:

TOGARAM2

Ensembl Gene ID:

ENSAPLG00000014230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044994

16060145 - 16099405

39261

ENSAPLT00000044295

16052537 - 16099405

46869

ENSAPLT00000014818

16066435 - 16099405

32971