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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16088593_16089848_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16088593 - 16089848
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TATATGTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTTTTTTACT
Flanking Amino Acid:
RDVMATIKQKGIEDRVSELP
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
69.4
0.44
1
67
43.7
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
67
0.62
1.6
82.93
38.6

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044994
16060145 - 16099405
39261
ENSAPLT00000044295
16052537 - 16099405
46869
ENSAPLT00000014818
16066435 - 16099405
32971