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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16090298_16091456_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16090298 - 16091456
Intron Length:
1159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAGG
5'SS Class:
major
3'SS Sequence:
GTTTTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GTTTTCTTAACA
Flanking Amino Acid:
PQLISANIVQIFDVFVPRLQ
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
67.7
43.2
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.5
0.71
0.9
77.5
35.6
Minor 5ss
40.6
-1.1
2.7
51.1
45.4
Minor BPS
85.7
1.12
0.9
87.92
29.1

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044295
16052537 - 16099405
46869
ENSAPLT00000014818
16066435 - 16099405
32971
ENSAPLT00000044994
16060145 - 16099405
39261