About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16091674_16096802_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16091674 - 16096802
Intron Length:
5129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
CTATTAGTAAGC
Flanking Amino Acid:
KVLEASIAHLDNTLLLQVLA
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
89.1
0.88
0.7
81.2
36.5
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
42.5
-0.5
2.4
55.35
43

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044295
16052537 - 16099405
46869
ENSAPLT00000014818
16066435 - 16099405
32971
ENSAPLT00000044994
16060145 - 16099405
39261