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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16096890_16099148_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16096890 - 16099148
Intron Length:
2259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGGCT
5'SS Class:
major
3'SS Sequence:
TCTTGCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTAAGAAACT
Flanking Amino Acid:
AMQDVTEHLSVLVASVYPRK
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65
38.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
73.6
0.53
1
69.4
36.8
Minor 5ss
38
-1.4
3.6
56.7
47.6
Minor BPS
43.3
-0.4
2.5
70.99
45.3

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044994
16060145 - 16099405
39261
ENSAPLT00000044295
16052537 - 16099405
46869
ENSAPLT00000014818
16066435 - 16099405
32971