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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16101659_16101858_F

Intron Information:

Intron Rank:
135694
Intron Class:
major
Intron Phase:
Intron Coordinates:
16101659 - 16101858
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTATTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.1
0.52
1
66.8
43.2
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
65.1
0.33
1.5
67.86
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028611
16101636 - 16103378
1743
ENSAPLT00000024319
16101636 - 16105165
3530