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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16112740_16115055_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16112740 - 16115055
Intron Length:
2316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGCTTCTTAACT
Flanking Amino Acid:
AGSEPALNQASAEESPGKAG
Intron Amino Acid Position:
1256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.2
0.79
0.7
80.4
24.9
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
77
0.92
1.2
82.73
38.4

Associated Gene:

Gene:
PCARE
Ensembl Gene ID:
ENSAPLG00000014228
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014816
16110925 - 16118822
7898