Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16126555_16127153_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

16126555 - 16127153

Intron Length:

599

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTATG

5'SS Class:

strong_major

3'SS Sequence:

CCTCCTACTAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TATTCATTCATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.93

0.8

83.5

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

64.4

0.32

63.6

30.3

Minor 5ss

39.5

-1.2

2.8

48.4

41.7

Minor BPS

60.5

0.41

82.44

38.8

Associated Gene:

Gene:

CLIP4

Ensembl Gene ID:

ENSAPLG00000013533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017935

16124227 - 16169726

45500

ENSAPLT00000014125

16124755 - 16148826

24072