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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16129643_16130515_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16129643 - 16130515
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAAAAT
U12 Branch Point Sequence:
TACAGCTAAAAT
Flanking Amino Acid:
QQNIDVIGNEIIKRGCNVND
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
58.2
0.21
1.2
65.3
36.8
Major PPT
82.7
0.73
0.8
80.5
31.5
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
45.3
-0.2
2.2
62.99
46.5

Associated Gene:

Gene:
CLIP4
Ensembl Gene ID:
ENSAPLG00000013533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017935
16124227 - 16169726
45500
ENSAPLT00000014125
16124755 - 16148826
24072
ENSAPLT00000037636
16126493 - 16148826
22334