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Intron Name: Anas_platyrhynchos_platyrhynchos_3_16130610_16131447_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16130610 - 16131447

Intron Length:

838

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

AATTGCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CATGTTTTAAAA

Flanking Amino Acid:

YTCKSGAHGIGDVETAVKFA

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.8

81.1

26.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.8

0.56

0.9

66.8

39.6

Minor 5ss

29.7

-2.3

2.6

30.1

36.9

Minor BPS

54.3

0.13

1.5

60.68

39.7

Associated Gene:

Gene:

CLIP4

Ensembl Gene ID:

ENSAPLG00000013533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017935

16124227 - 16169726

45500

ENSAPLT00000014125

16124755 - 16148826

24072

ENSAPLT00000037636

16126493 - 16148826

22334