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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16131610_16133289_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16131610 - 16133289
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTAATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATATTTAATT
Flanking Amino Acid:
SVILKNAKPKDVDATCSDFD
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.3
0.71
0.9
75.2
38.3
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
67
0.61
1.4
78.65
37.4

Associated Gene:

Gene:
CLIP4
Ensembl Gene ID:
ENSAPLG00000013533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037636
16126493 - 16148826
22334
ENSAPLT00000017935
16124227 - 16169726
45500
ENSAPLT00000014125
16124755 - 16148826
24072