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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16135054_16138826_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16135054 - 16138826
Intron Length:
3773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCTGA
5'SS Class:
major
3'SS Sequence:
CCTTTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTATGTTGATG
Flanking Amino Acid:
GDRVVIAGQKVGTLRFCGTT
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.1
42.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.5
0.64
0.8
77
31.8
Minor 5ss
42.1
-0.9
3.1
56.3
47.8
Minor BPS
46.4
-0.4
2.1
53.91
42

Associated Gene:

Gene:
CLIP4
Ensembl Gene ID:
ENSAPLG00000013533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017935
16124227 - 16169726
45500
ENSAPLT00000014125
16124755 - 16148826
24072
ENSAPLT00000037636
16126493 - 16148826
22334