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Intron Name: Anas_platyrhynchos_platyrhynchos_3_16138963_16139657_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16138963 - 16139657

Intron Length:

695

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTATAACCT

5'SS Class:

major

3'SS Sequence:

ATTTTCTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

TATCTCTGATTC

Flanking Amino Acid:

VQYFKCAPKRGIFAPLSKIS

Intron Amino Acid Position:

341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.6

0.32

1.1

55.4

41.6

Major BPS

75.9

0.64

66.1

40.5

Major PPT

86.4

0.82

0.7

78.3

35.6

Minor 5ss

40.5

-1.1

3.2

58.2

45.9

Minor BPS

49.2

-0

1.7

61.7

37.5

Associated Gene:

Gene:

CLIP4

Ensembl Gene ID:

ENSAPLG00000013533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037636

16126493 - 16148826

22334

ENSAPLT00000017935

16124227 - 16169726

45500

ENSAPLT00000014125

16124755 - 16148826

24072