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Intron Name: Anas_platyrhynchos_platyrhynchos_3_16142434_16143663_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16142434 - 16143663

Intron Length:

1230

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTCTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTGAT

U12 Branch Point Sequence:

GATCTCTGAAGG

Flanking Amino Acid:

NRGKMLPAKEGFPGYSSSSS

Intron Amino Acid Position:

416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

1.1

83.2

30.8

Major BPS

72.4

0.56

1.2

63.1

44.4

Major PPT

85.8

0.81

0.7

81.6

30.5

Minor 5ss

40.6

-1.1

2.6

50.9

45.5

Minor BPS

47.4

-0.3

1.8

51.67

42.2

Associated Gene:

Gene:

CLIP4

Ensembl Gene ID:

ENSAPLG00000013533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014125

16124755 - 16148826

24072

ENSAPLT00000037636

16126493 - 16148826

22334

ENSAPLT00000017935

16124227 - 16169726

45500