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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16146294_16147085_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16146294 - 16147085
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTTCTTCATTT
Flanking Amino Acid:
GIFAPPSRVQRLTGSLDSLA
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80
0.68
0.8
77.9
35.9
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
52.1
0.14
1.8
70.06
41.7

Associated Gene:

Gene:
CLIP4
Ensembl Gene ID:
ENSAPLG00000013533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037636
16126493 - 16148826
22334
ENSAPLT00000017935
16124227 - 16169726
45500
ENSAPLT00000014125
16124755 - 16148826
24072