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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16147151_16147816_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16147151 - 16147816
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTCTATTAACC
Flanking Amino Acid:
SSSKINHSFPGFRRSLSTTS
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
78.4
0.64
0.8
77.7
30
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
59.9
0.29
1.6
68.41
36.1

Associated Gene:

Gene:
CLIP4
Ensembl Gene ID:
ENSAPLG00000013533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017935
16124227 - 16169726
45500
ENSAPLT00000014125
16124755 - 16148826
24072
ENSAPLT00000037636
16126493 - 16148826
22334