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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16147890_16148504_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16147890 - 16148504
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCAAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGCTTTTCAAAC
Flanking Amino Acid:
REINRRNSFVRSKSSMSRHS
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
66.5
0.37
1
61.1
39.2
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
50.2
-0
1.6
59.97
39.3

Associated Gene:

Gene:
CLIP4
Ensembl Gene ID:
ENSAPLG00000013533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017935
16124227 - 16169726
45500
ENSAPLT00000014125
16124755 - 16148826
24072
ENSAPLT00000037636
16126493 - 16148826
22334