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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16148631_16169503_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16148631 - 16169503
Intron Length:
20873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTGG
5'SS Class:
major
3'SS Sequence:
CTTACTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGTCACTTACTT
Flanking Amino Acid:
LTSSNEMGTISHLQGSGVAG
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
64.7
41.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81
0.7
0.8
75.5
32.9
Minor 5ss
45
-0.5
2.6
58.3
46.4
Minor BPS
55.8
0.26
1.8
75.41
41.1

Associated Gene:

Gene:
CLIP4
Ensembl Gene ID:
ENSAPLG00000013533
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017935
16124227 - 16169726
45500