Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16156809_16157858_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16156809 - 16157858

Intron Length:

1050

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCTGTT

5'SS Class:

major

3'SS Sequence:

GTCTCTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

AAATTCTTATTC

Flanking Amino Acid:

ILERIEYCTQDPDVINTALP

Intron Amino Acid Position:

363

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

1.1

77.9

36.9

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

79.6

0.67

0.8

73.5

31.5

Minor 5ss

0.03

2.9

75.5

40.6

Minor BPS

57.3

0.21

1.5

62.46

36.9

Associated Gene:

Gene:

ALK

Ensembl Gene ID:

ENSAPLG00000013002

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013578

16156104 - 16171775

15672