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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16158657_16159857_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16158657 - 16159857
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTTGCTTC
5'SS Class:
weak_major
3'SS Sequence:
CTTCTGTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
GTCTCCTTCATT
Flanking Amino Acid:
EGIFTSKTDTWSFGVLLWEI
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.2
59.7
40
Major BPS
75
0.62
1.1
77.2
36
Major PPT
79.1
0.66
0.9
77
36.3
Minor 5ss
53.6
0.12
2.3
65.8
39.9
Minor BPS
67
0.62
1.8
80.32
42.1

Associated Gene:

Gene:
ALK
Ensembl Gene ID:
ENSAPLG00000013002
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013578
16156104 - 16171775
15672