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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16159960_16161701_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16159960 - 16161701
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
TTGTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCATGGCTGACT
Flanking Amino Acid:
GDFGMARDIYRASYYRKGGC
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.2
0.81
0.8
81.5
30.6
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
42
-0.5
2.6
64.35
46.1

Associated Gene:

Gene:
ALK
Ensembl Gene ID:
ENSAPLG00000013002
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013578
16156104 - 16171775
15672