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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16162983_16166987_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16162983 - 16166987
Intron Length:
4005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTGCTTTTAAGC
Flanking Amino Acid:
SFLRETRPRPNQPSSLSMLD
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
79
0.65
1
76.5
37.5
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
58.1
0.23
1.6
66.7
39.4

Associated Gene:

Gene:
ALK
Ensembl Gene ID:
ENSAPLG00000013002
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013578
16156104 - 16171775
15672