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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16168590_16169495_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16168590 - 16169495
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TCCTTGTCAACC
Flanking Amino Acid:
DPTPLQVAVKTLPEVCSEQD
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
48
-0.1
2.2
61.43
44.4

Associated Gene:

Gene:
ALK
Ensembl Gene ID:
ENSAPLG00000013002
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013578
16156104 - 16171775
15672