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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16169587_16171494_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16169587 - 16171494
Intron Length:
1908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGGTCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TCTGTAGTAATA
Flanking Amino Acid:
EVPRKNISLIRGLGHGAFGE
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
70
0.45
1
61.4
44.6
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
44.9
-0.3
2.2
59.09
41.6

Associated Gene:

Gene:
ALK
Ensembl Gene ID:
ENSAPLG00000013002
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013578
16156104 - 16171775
15672