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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16426_22904_F

Intron Information:

Intron Rank:
149694
Intron Class:
major
Intron Phase:
Intron Coordinates:
16426 - 22904
Intron Length:
6479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCATCCTGATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
88.9
0.88
0.7
81.2
36.5
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
49.3
0.03
2
69.58
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030554
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043791
6235 - 23278
17044
ENSAPLT00000038117
6235 - 23278
17044
ENSAPLT00000034393
6741 - 23278
16538