About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16519668_16521330_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16519668 - 16521330
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
ATGTGTGTGTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTTTCTATTC
Flanking Amino Acid:
ATGRAFLFNKVVNLQYSEVQ
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
75.3
36.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
59.7
0.22
1.1
58.6
46.7
Minor 5ss
30
-2.3
2.7
33.5
41.8
Minor BPS
47.8
-0.1
1.8
61.68
38.7

Associated Gene:

Gene:
YPEL5
Ensembl Gene ID:
ENSAPLG00000008969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009323
16519495 - 16521633
2139