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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_165452_168958_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
165452 - 168958
Intron Length:
3507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTTTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTTACTCATCA
Flanking Amino Acid:
FCGLCVCPCNKLKSSDAYKK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
72.8
35.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78.4
0.64
0.8
75.8
32.8
Minor 5ss
35.6
-1.6
3.5
49.9
40.8
Minor BPS
51.7
0.05
2
69.94
41.8

Associated Gene:

Gene:
SNAP25
Ensembl Gene ID:
ENSAPLG00000008826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009204
148081 - 174889
26809