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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16605876_16607573_F

Intron Information:

Intron Rank:
130238
Intron Class:
major
Intron Phase:
Intron Coordinates:
16605876 - 16607573
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTACATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
100
1.24
0.5
100
0
Major PPT
89.7
0.89
0.7
82.2
34.1
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
68.8
0.67
1.8
89.03
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038756
16601305 - 16609059
7755