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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16619477_16648355_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
16619477 - 16648355
Intron Length:
28879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGCTTTC
5'SS Class:
weak_major
3'SS Sequence:
CTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTTTTCTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.4
65.2
41.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
45.3
-0.5
2.9
61.9
42.9
Minor BPS
66.2
0.5
1.6
77.94
32.1

Associated Gene:

Gene:
LCLAT1
Ensembl Gene ID:
ENSAPLG00000009124
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009494
16619231 - 16706452
87222