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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16648525_16650017_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16648525 - 16650017
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATATCATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
GAAGTCATAATA
Flanking Amino Acid:
VVATWLTLPVALLEMVFGAK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
79.4
0.73
1
80.1
32
Major PPT
72.3
0.5
0.9
63.5
42.3
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
48.1
-0.1
1.7
54.81
37.7

Associated Gene:

Gene:
LCLAT1
Ensembl Gene ID:
ENSAPLG00000009124
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009494
16619231 - 16706452
87222