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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16650217_16656785_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16650217 - 16656785
Intron Length:
6569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTCAC
5'SS Class:
major
3'SS Sequence:
TTTTAAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
KSSLKSIPGFGWAMQVAAFI
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
79.2
38
Minor 5ss
33.3
-1.9
3.2
40.4
40.2
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
LCLAT1
Ensembl Gene ID:
ENSAPLG00000009124
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009494
16619231 - 16706452
87222