About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16656933_16664680_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16656933 - 16664680
Intron Length:
7748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAATTTTTATTC
Flanking Amino Acid:
LIFPEGTDLTESTKARSNDF
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
56.5
0.18
1.5
63.53
36.4

Associated Gene:

Gene:
LCLAT1
Ensembl Gene ID:
ENSAPLG00000009124
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009494
16619231 - 16706452
87222