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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16664798_16705943_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16664798 - 16705943
Intron Length:
41146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
ATCTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTACCCCAAAT
Flanking Amino Acid:
FTFVVECLREGNNLDAIHDI
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.3
0.7
0.8
74
36.1
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
52.8
0.17
2
79.89
41.1

Associated Gene:

Gene:
LCLAT1
Ensembl Gene ID:
ENSAPLG00000009124
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009494
16619231 - 16706452
87222