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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16728703_16730556_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16728703 - 16730556
Intron Length:
1854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TACTATCTAAAT
Flanking Amino Acid:
GPQLFVTAMEWLTLVMYI*
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
83.3
0.75
0.7
76.2
32.3
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
48.3
-0
1.9
68.28
42

Associated Gene:

Gene:
CAPN13
Ensembl Gene ID:
ENSAPLG00000009169
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020921
16728676 - 16770285
41610
ENSAPLT00000009585
16728608 - 16785373
56766