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Intron Name: Anas_platyrhynchos_platyrhynchos_3_16740242_16741233_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16740242 - 16741233

Intron Length:

992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGCTT

5'SS Class:

strong_major

3'SS Sequence:

TCAATCCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

GTTTTGTCAATC

Flanking Amino Acid:

RQLLNEVLLQDEMASLGGKF

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.8

39.8

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

76.4

0.59

0.9

69.7

36.3

Minor 5ss

-1.6

3.6

55.8

48.4

Minor BPS

49.4

-0

2.2

66.75

39.3

Associated Gene:

Gene:

CAPN13

Ensembl Gene ID:

ENSAPLG00000009169

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020921

16728676 - 16770285

41610

ENSAPLT00000009585

16728608 - 16785373

56766