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Intron Name: Anas_platyrhynchos_platyrhynchos_3_16742412_16743508_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16742412 - 16743508

Intron Length:

1097

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGAATC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCATCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TATTCTTTCATC

Flanking Amino Acid:

DSQISPMLPTVVPRQNQDSS

Intron Amino Acid Position:

505

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

79.3

34.5

Major BPS

88.7

0.96

0.8

36.5

Major PPT

84.2

0.77

0.8

77.6

35.8

Minor 5ss

38.5

-1.3

3.1

53.9

43.1

Minor BPS

65.4

0.47

1.7

75.04

35.9

Associated Gene:

Gene:

CAPN13

Ensembl Gene ID:

ENSAPLG00000009169

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020921

16728676 - 16770285

41610

ENSAPLT00000009585

16728608 - 16785373

56766