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Intron Name: Anas_platyrhynchos_platyrhynchos_3_16744861_16747668_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16744861 - 16747668

Intron Length:

2808

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCACA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAG

U12 Branch Point Sequence:

AGATAGCCACCT

Flanking Amino Acid:

TSRIGFSITKENSKVLKQDF

Intron Amino Acid Position:

439

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.3

0.95

0.8

80.7

33.8

Major BPS

54.8

0.12

1.6

53.3

44.2

Major PPT

90.8

0.92

0.7

88.9

28.1

Minor 5ss

39.7

-1.2

2.8

49.8

46.2

Minor BPS

-1.2

2.4

50.44

42.5

Associated Gene:

Gene:

CAPN13

Ensembl Gene ID:

ENSAPLG00000009169

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020921

16728676 - 16770285

41610

ENSAPLT00000009585

16728608 - 16785373

56766