Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16750031_16750864_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16750031 - 16750864

Intron Length:

834

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATTTCCC

5'SS Class:

major

3'SS Sequence:

TCTGTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGAAAAA

U12 Branch Point Sequence:

TCAGACTGAAAA

Flanking Amino Acid:

LCIKKDDGEFWMSCEDFCEQ

Intron Amino Acid Position:

333

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.42

1.1

40.1

Major BPS

48.5

-0

1.2

53.7

38.6

Major PPT

85.8

0.81

0.8

80.4

31.6

Minor 5ss

41.8

-0.9

2.7

51.3

40.2

Minor BPS

46.5

-0.2

1.8

55.61

42.6

Associated Gene:

Gene:

CAPN13

Ensembl Gene ID:

ENSAPLG00000009169

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020921

16728676 - 16770285

41610

ENSAPLT00000009585

16728608 - 16785373

56766