Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16752408_16753427_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16752408 - 16753427

Intron Length:

1020

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATTG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TTCCTCTTTACA

Flanking Amino Acid:

HAYTVTGAVKIRSKNGWEHI

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.8

0.99

0.8

81.6

33.2

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

88.4

0.86

0.7

83.3

25.2

Minor 5ss

41.6

-0.9

3.1

55.7

48.5

Minor BPS

62.5

0.39

1.6

72.39

39.3

Associated Gene:

Gene:

CAPN13

Ensembl Gene ID:

ENSAPLG00000009169

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020921

16728676 - 16770285

41610

ENSAPLT00000009585

16728608 - 16785373

56766