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Intron Name: Anas_platyrhynchos_platyrhynchos_3_16768239_16770051_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

16768239 - 16770051

Intron Length:

1813

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTCTC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

GGGCAATTAATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

72.2

39.5

Major BPS

0.82

0.8

24.9

Major PPT

84.3

0.77

0.7

80.4

24.9

Minor 5ss

31.9

-2.1

3.2

43.3

44.4

Minor BPS

44.9

-0.5

1.8

45.09

40.5

Associated Gene:

Gene:

CAPN13

Ensembl Gene ID:

ENSAPLG00000009169

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020921

16728676 - 16770285

41610