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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16807354_16807470_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16807354 - 16807470
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAAGACA
5'SS Class:
major
3'SS Sequence:
TTGCCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GCTTCCTTTACT
Flanking Amino Acid:
LRAGQAQRWLGNTKRTAEVW
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
61.7
38.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
80.5
0.69
0.8
77.7
31
Minor 5ss
26
-2.8
2.9
23.1
37.1
Minor BPS
74.3
0.85
1.6
85.16
41

Associated Gene:

Gene:
GALNT14
Ensembl Gene ID:
ENSAPLG00000009654
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010081
16798240 - 16839884
41645