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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16807629_16812790_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16807629 - 16812790
Intron Length:
5162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TGGCACTTAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGGCACTTAAGA
Flanking Amino Acid:
VAASSDLRGGESHASECGGC
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.1
59.5
39.8
Major BPS
62
0.3
1
62.3
30.4
Major PPT
47.1
-0.1
1.7
50.6
42.5
Minor 5ss
36.5
-1.5
2.8
41.1
39
Minor BPS
51.9
0.06
1.9
62.81
42.9

Associated Gene:

Gene:
GALNT14
Ensembl Gene ID:
ENSAPLG00000009654
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040218
16798240 - 16840347
42108