Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16816049_16819491_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

16816049 - 16819491

Intron Length:

3443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTGAT

5'SS Class:

major

3'SS Sequence:

AGCCCCTGAAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGTCAA

U12 Branch Point Sequence:

AGCCCCTGAAAA

Flanking Amino Acid:

IILVDDFSDDPAGEYYRDTW

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.3

74.1

36.5

Major BPS

60.5

0.26

1.3

63.4

44.3

Major PPT

-0.1

1.1

34.9

Minor 5ss

35.9

-1.6

3.3

49.7

41.3

Minor BPS

51.4

0.04

1.6

58.92

39.8

Associated Gene:

Gene:

GALNT14

Ensembl Gene ID:

ENSAPLG00000009654

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040218

16798240 - 16840347

42108