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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16819560_16825113_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16819560 - 16825113
Intron Length:
5554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAA
U12 Branch Point Sequence:
TGTCACAGATTT
Flanking Amino Acid:
ARSTLLRTIRSVLNRTPVHL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
60.5
0.26
1.3
63.4
44.3
Major PPT
82.8
0.74
0.7
81.3
30.8
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
41.6
-0.5
2
61.75
41.5

Associated Gene:

Gene:
GALNT14
Ensembl Gene ID:
ENSAPLG00000009654
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041137
16798240 - 16861091
62852
ENSAPLT00000040218
16798240 - 16840347
42108
ENSAPLT00000010081
16798240 - 16839884
41645