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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16865300_16873289_R

Intron Information:

Intron Rank:
149557
Intron Class:
major
Intron Phase:
Intron Coordinates:
16865300 - 16873289
Intron Length:
7990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTGCTCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
72.7
0.51
1
73.5
37.1
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
57.1
0.09
1.5
61.27
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027995
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017845
16865212 - 16878117
12906