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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16870423_16873289_R

Intron Information:

Intron Rank:
149559
Intron Class:
major
Intron Phase:
Intron Coordinates:
16870423 - 16873289
Intron Length:
2867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.1
0.47
1.2
75.7
37.3
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
65.1
0.47
1.5
77.07
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027995
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038152
16870235 - 16878117
7883