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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16887808_16893144_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16887808 - 16893144
Intron Length:
5337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTCT
5'SS Class:
major
3'SS Sequence:
TTTTCACCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
QYSTGKTTFIRYLLEQDFPG
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
73.1
38.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.4
0.77
0.7
78
29.7
Minor 5ss
44.9
-0.5
3.2
65.7
45.4
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
EHD3
Ensembl Gene ID:
ENSAPLG00000010467
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010929
16887581 - 16914580
27000